/** * Override of theme_breadcrumb() */ function exchange_breadcrumb($variables) { $settings['toggle_breadcrumb_current_page'] = theme_get_setting('toggle_breadcrumb_current_page', 'exchange'); $settings['toggle_breadcrumb'] = theme_get_setting('toggle_breadcrumb', 'exchange'); if ($settings['toggle_breadcrumb'] == 0) { return NULL; } $breadcrumb = $variables['breadcrumb']; if (!empty($breadcrumb)) { // Provide a navigational heading to give context for breadcrumb links to // screen-reader users. Make the heading invisible with .element-invisible. $output = '

' . t('You are here') . '

'; // Add current item to the breadcrumb if enabled if ($settings['toggle_breadcrumb_current_page'] == 1) { $breadcrumb[] = '' . drupal_get_title() . ''; } $output .= ''; return $output; } } /** * Preprocess variables for html.tpl.php */ function exchange_preprocess_html(&$variables) { // Load settings $settings['typography'] = theme_get_setting('typography', 'exchange'); $settings['slider'] = theme_get_setting('slider', 'exchange'); $settings['layout'] = theme_get_setting('layout', 'exchange'); $settings['style'] = theme_get_setting('style', 'exchange'); // Set body background if ($settings['style']['background'] == 'custom') { $url = file_create_url($settings['style']['custom_bg']['path']); $repeat = $settings['style']['custom_bg']['repeat']; $pos = $settings['style']['custom_bg']['y_position'] . ' ' . $settings['style']['custom_bg']['x_position']; $variables['attributes_array']['style'] = "background:url({$url}) {$repeat} {$pos};"; } else { $variables['classes_array'][] = $settings['style']['background']; } // Make $base_path available to html.tpl.php global $base_path; $variables['base_path'] = $base_path; // Add jQuery UI effects (includes easing functionality which is // needed for drop down menus and slider) drupal_add_library('system', 'effects'); // Add Twitter Bootstrap functions if jquery_update has been enabled if (module_exists('jquery_update')) { drupal_add_js(drupal_get_path('theme', 'exchange') . '/js/bootstrap.min.js', array('group' => JS_THEME, 'every_page' => TRUE)); drupal_add_js(drupal_get_path('theme', 'exchange') . '/js/exchange.bootstrap.js', array('group' => JS_THEME, 'every_page' => TRUE)); } // Add slider settings if (variable_get('exchange_theme_layerslider', FALSE)) { drupal_add_js(array('exchange' => array('autostart' => $settings['slider']['config']['autostart'])), 'setting'); drupal_add_js(array('exchange' => array('pauseonhover' => $settings['slider']['config']['pauseonhover'])), 'setting'); drupal_add_js(array('exchange' => array('autoplayvideos' => $settings['slider']['config']['autoplayvideos'])), 'setting'); } // Add responsive settings $responsive_menu_type = isset($settings['layout']['responsive_menu']['type']) ? $settings['layout']['responsive_menu']['type'] : 'collapse'; drupal_add_js(array('exchange' => array('responsive_menu_type' => $responsive_menu_type)), 'setting'); $responsive_menu_trigger = isset($settings['layout']['responsive_menu']['trigger']) ? $settings['layout']['responsive_menu']['trigger'] : 'auto'; drupal_add_js(array('exchange' => array('responsive_menu_trigger' => $responsive_menu_trigger)), 'setting'); $responsive_menu_breakpoint = '1023'; if (isset($settings['layout']['responsive_menu']['breakpoint']) && !empty($settings['layout']['responsive_menu']['breakpoint'])) { $responsive_menu_breakpoint = $settings['layout']['responsive_menu']['breakpoint']; } drupal_add_js(array('exchange' => array('responsive_menu_breakpoint' => $responsive_menu_breakpoint)), 'setting'); if (!empty($variables['page']['sidebar_first'])) { // Unset no-sidebars class if exists $key = array_search('no-sidebars', $variables['classes_array']); if ($key) { unset($variables['classes_array'][$key]); } // Add sidebar class // $variables['classes_array'][] = 'sidebar-' . $settings['layout']['sidebar']; $variables['classes_array'][] = 'sidebar-right'; } // Add button class $variables['classes_array'][] = $settings['style']['button']; if (!empty($variables['page']['featured'])) { $variables['classes_array'][] = 'featured'; } if (!empty($variables['page']['triptych_first']) || !empty($variables['page']['triptych_middle']) || !empty($variables['page']['triptych_last'])) { $variables['classes_array'][] = 'triptych'; } if (!empty($variables['page']['footer_firstcolumn']) || !empty($variables['page']['footer_secondcolumn']) || !empty($variables['page']['footer_thirdcolumn']) || !empty($variables['page']['footer_fourthcolumn'])) { $variables['classes_array'][] = 'footer-columns'; } // Set path to the generated files directory global $theme_key; $theme = $theme_key; $path = variable_get('theme_' . $theme . '_files_directory'); // Load stylesheet for fonts $filepath = $path . '/' . $theme . '.fonts.css'; if (file_exists($filepath)) { drupal_add_css($filepath, array( 'preprocess' => TRUE, 'group' => CSS_THEME, 'media' => 'screen', 'every_page' => TRUE, )); } // Add viewport tag $viewport = array( '#type' => 'html_tag', '#tag' => 'meta', '#attributes' => array( 'name' => 'viewport', 'content' => 'width=device-width, initial-scale=1.0' ) ); drupal_add_html_head($viewport, 'viewport'); } /** * Override or insert variables into the page template for HTML output. */ function exchange_process_html(&$variables) { // Hook into color.module. if (module_exists('color')) { _color_html_alter($variables); } } /** * Override or insert variables into the page template. */ function exchange_preprocess_page(&$variables) { if (isset($variables['node'])) { if ($variables['node']->type != '') { $variables['theme_hook_suggestions'][] = 'page__' . $variables['node']->type; } } // Load settings $settings['toggle_breadcrumb'] = theme_get_setting('toggle_breadcrumb', 'exchange'); $settings['toggle_frontpage_title'] = theme_get_setting('toggle_frontpage_title', 'exchange'); $settings['slider'] = theme_get_setting('slider', 'exchange'); $settings['layout'] = theme_get_setting('layout', 'exchange'); // Set helper $variables['hide_title'] variable $variables['hide_title'] = FALSE; if ($settings['toggle_frontpage_title'] == 0 && drupal_is_front_page()) { $variables['hide_title'] = TRUE; } // Create a footer span class depending on set amount footer columns $variables['footer_span'] = 4; $variables['footer_columns'] = 3; $variables['footer_column_indexes'] = array( 1 => 'footer_firstcolumn', 2 => 'footer_secondcolumn', 3 => 'footer_thirdcolumn', 4 => 'footer_fourthcolumn', ); if (isset($settings['layout']['footer_columns'])) { $variables['footer_span'] = 12 / $settings['layout']['footer_columns']; $variables['footer_columns'] = $settings['layout']['footer_columns']; } // Create slider if (variable_get('exchange_theme_layerslider', FALSE)) { if ($settings['slider']['config']['status'] == 1 && drupal_is_front_page()) { // Add global bg if (isset($settings['slider']['config']['background']) && !empty($settings['slider']['config']['background'])) { $background = 'background-image:url(' . file_create_url($settings['slider']['config']['background']) . ');'; } else { $background = ''; } $height = "{$settings['slider']['config']['height']}px"; $width = "{$settings['slider']['config']['width']}px"; // If there are layers, add slider to the Featured region $variables['page']['slider']['slider_container'] = array( '#type' => 'markup', '#prefix' => "
", '#suffix' => '
', ); $variables['page']['slider']['slider_container']['slider'] = array( '#type' => 'markup', '#prefix' => "
", '#suffix' => '
', ); if (isset($settings['slider']['layers'])) { foreach ($settings['slider']['layers'] as $lid => $layer) { if (!empty($layer)) { // Set layer properties $not_properties = array('weight', 'title', 'background', 'sublayers'); $properties = array(); foreach ($layer as $property => $value) { if (!in_array($property, $not_properties) && !empty($value)) { $properties[$property] = "{$property}: {$value};"; } } $variables['page']['slider']['slider_container']['slider'][$lid] = array( '#type' => 'markup', '#prefix' => "
", '#suffix' => '
', ); // Get layer background path if (isset($layer['background']) && !empty($layer['background'])) { $path = file_create_url($layer['background']); $variables['page']['slider']['slider_container']['slider'][$lid]['bg'] = array( '#type' => 'markup', '#markup' => "layer{$lid}-background", ); } // Sublayers if (isset($layer['sublayers'])) { $i = 2; foreach ($layer['sublayers'] as $sid => $sublayer) { // Set sublayer properties foreach ($sublayer['properties'] as $property => $value) { $properties[$property] = "{$property}: {$value};"; } $style = "left:{$sublayer['x']}px;top:{$sublayer['y']}px;z-index:{$sublayer['weight']}"; switch ($sublayer['type']) { case 'heading': $content = theme_html_tag(array('element' => array( '#tag' => $sublayer['heading']['level'], '#attributes' => array( 'class' => array("ls-s{$i}"), 'rel' => implode('', $properties), 'style' => $style, ), '#value' => $sublayer['heading']['heading'], ))); break; case 'image': if (isset($sublayer['image']['path'])) { $content = theme_image(array( 'path' => file_create_url($sublayer['image']['path']), 'attributes' => array( 'class' => array("ls-s{$i}"), 'rel' => implode('', $properties), 'style' => $style, 'alt' => "ls-s{$i}", ) )); } break; case 'button': $content = "
"; $content .= l( $sublayer['button']['text'], $sublayer['button']['url'], array('attributes' => array( 'class' => array('button', $sublayer['button']['color']), )) ); $content .= '
'; break; case 'html': $content = "
"; $content .= $sublayer['html']['content']; $content .= '
'; break; case 'video': if (!empty($sublayer['video']['id'])) { $content = "
"; // Vimeo IDs are numerical while Youtube's are not if (is_numeric($sublayer['video']['id'])) { $content .= ""; } else { $content .= ""; } $content .= '
'; } break; } $variables['page']['slider']['slider_container']['slider'][$lid][$sid] = array( '#type' => 'markup', '#markup' => $content, ); $i++; } } } } } } } // Create a menu variable that contains nested links. Default $main_menu // doesn't contain them. $main_menu_tree = menu_tree_all_data('main-menu'); $variables['main_menu_expanded'] = menu_tree_output($main_menu_tree); } /** * Override or insert variables into the page template. */ function exchange_process_page(&$variables) { // Hook into color.module. if (module_exists('color')) { _color_page_alter($variables); } // Always print the site name and slogan, but if they are toggled off, we'll // just hide them visually. $variables['hide_site_name'] = theme_get_setting('toggle_name') ? FALSE : TRUE; $variables['hide_site_slogan'] = theme_get_setting('toggle_slogan') ? FALSE : TRUE; if ($variables['hide_site_name']) { // If toggle_name is FALSE, the site_name will be empty, so we rebuild it. $variables['site_name'] = filter_xss_admin(variable_get('site_name', 'Drupal')); } if ($variables['hide_site_slogan']) { // If toggle_site_slogan is FALSE, the site_slogan will be empty, so we rebuild it. $variables['site_slogan'] = filter_xss_admin(variable_get('site_slogan', '')); } // Since the title and the shortcut link are both block level elements, // positioning them next to each other is much simpler with a wrapper div. if (!empty($variables['title_suffix']['add_or_remove_shortcut']) && $variables['title']) { // Add a wrapper div using the title_prefix and title_suffix render elements. $variables['title_prefix']['shortcut_wrapper'] = array( '#markup' => '
', '#weight' => 100, ); $variables['title_suffix']['shortcut_wrapper'] = array( '#markup' => '
', '#weight' => -99, ); // Make sure the shortcut link is the first item in title_suffix. $variables['title_suffix']['add_or_remove_shortcut']['#weight'] = -100; } } /** * Implements hook_preprocess_maintenance_page(). */ function exchange_preprocess_maintenance_page(&$variables) { if (!$variables['db_is_active']) { unset($variables['site_name']); } // Set body background $settings['style'] = theme_get_setting('style', 'exchange'); if ($settings['style']['background'] == 'custom') { $url = file_create_url($settings['style']['custom_bg']['path']); $repeat = $settings['style']['custom_bg']['repeat']; $pos = $settings['style']['custom_bg']['y_position'] . ' ' . $settings['style']['custom_bg']['x_position']; $variables['attributes_array']['style'] = "background:url({$url}) {$repeat} {$pos};"; } else { $variables['classes_array'][] = $settings['style']['background']; } } /** * Override or insert variables into the maintenance page template. */ function exchange_process_maintenance_page(&$variables) { // Always print the site name and slogan, but if they are toggled off, we'll // just hide them visually. $variables['hide_site_name'] = theme_get_setting('toggle_name') ? FALSE : TRUE; $variables['hide_site_slogan'] = theme_get_setting('toggle_slogan') ? FALSE : TRUE; if ($variables['hide_site_name']) { // If toggle_name is FALSE, the site_name will be empty, so we rebuild it. $variables['site_name'] = filter_xss_admin(variable_get('site_name', 'Drupal')); } if ($variables['hide_site_slogan']) { // If toggle_site_slogan is FALSE, the site_slogan will be empty, so we rebuild it. $variables['site_slogan'] = filter_xss_admin(variable_get('site_slogan', '')); } } /** * Override or insert variables into the user picture template. */ function exchange_preprocess_user_picture(&$variables) { $variables['user_picture'] = ''; if (variable_get('user_pictures', 0)) { $account = $variables['account']; if (!empty($account->picture)) { if (is_numeric($account->picture)) { $account->picture = file_load($account->picture); } if (!empty($account->picture->uri)) { $filepath = $account->picture->uri; } } elseif (variable_get('user_picture_default', '')) { $filepath = variable_get('user_picture_default', ''); } if (isset($filepath)) { $alt = t("@user's picture", array('@user' => format_username($account))); // If the image does not have a valid Drupal scheme (for eg. HTTP), // don't load image styles. if (module_exists('image') && file_valid_uri($filepath) && $style = variable_get('user_picture_style', '')) { $variables['user_picture'] = theme('image_style', array( 'style_name' => $style, 'path' => $filepath, 'alt' => $alt, 'title' => $alt, 'attributes' => array( 'class' => array('img-circle'), ), )); } else { $variables['user_picture'] = theme('image', array( 'path' => $filepath, 'alt' => $alt, 'title' => $alt, 'attributes' => array( 'class' => array('img-circle'), ), )); } if (!empty($account->uid) && user_access('access user profiles')) { $attributes = array('attributes' => array('title' => t('View user profile.')), 'html' => TRUE); $variables['user_picture'] = l($variables['user_picture'], "user/$account->uid", $attributes); } } } } /** * Override or insert variables into the node template. */ function exchange_preprocess_node(&$variables) { $node = $variables['elements']['#node']; // Add class to the node title so we can address it in the stylesheet $variables['title_attributes_array']['class'][] = 'node-title'; // Unset read more button if (isset($variables['content']['links']['node']['#links']['node-readmore'])) { unset($variables['content']['links']['node']['#links']['node-readmore']); } // Rewrite $variables['submitted'] for blogs if ($variables['type'] == 'article') { $variables['author'] = l($node->name, 'user/' . $node->uid); $variables['submitted'] = format_date($node->created, 'custom', 'j F Y'); if (isset($node->comment_count)) { $variables['comment_count'] = format_plural($node->comment_count, '1 comment', '@count comments'); } } if ($variables['view_mode'] == 'full' && node_is_page($variables['node'])) { $variables['classes_array'][] = 'node-full'; } $variables['theme_hook_suggestions'][] = 'node__' . $variables['type'] . '__' . $variables['view_mode']; } /** * Override or insert variables into the node template. */ function exchange_process_node(&$variables) { if ($variables['type'] == 'team_member') { // If there is social links, set $social_links TRUE which will be used // to determine if there is any in the node--team-member.tpl.php $variables['social_links'] = FALSE; foreach ($variables['content'] as $key => $item) { if (substr($key, 0, 12) == 'field_social') { $variables['social_links'] = TRUE; } } } } /** * Override or insert variables into the field template. */ function exchange_preprocess_field(&$variables, $hook) { if ($variables['element']['#field_name'] == 'field_testimonial_image') { $variables['classes_array'][] = 'img-circle'; } } /** * Override or insert variables into the comment template. */ function exchange_preprocess_comment(&$variables) { $comment = $variables['elements']['#comment']; // Change date format $variables['created'] = format_date($comment->created, 'custom', 'j F Y'); $variables['changed'] = format_date($comment->changed, 'custom', 'j F Y'); } /** * Override or insert variables into the block template. */ function exchange_preprocess_block(&$variables) { // In the header region visually hide block titles. if ($variables['block']->region == 'header') { $variables['title_attributes_array']['class'][] = 'element-invisible'; } } /** * Implements hook_preprocess(). */ function exchange_preprocess_twitter_block_tweet(&$variables) { $variables['created'] = format_date(strtotime($variables['tweet']->created_at), 'custom', 'j F Y'); $variables['text'] = twitter_block_linkify($variables['tweet']->text); } /** * Returns HTML for a sort icon. */ function exchange_tablesort_indicator($variables) { if ($variables['style'] == "asc") { return theme('image', array( 'path' => drupal_get_path('theme', 'exchange') . '/images/arrow-asc.png', 'width' => 11, 'height' => 6, 'alt' => t('sort ascending'), 'title' => t('sort ascending')) ); } else { return theme('image', array( 'path' => drupal_get_path('theme', 'exchange') . '/images/arrow-desc.png', 'width' => 11, 'height' => 6, 'alt' => t('sort descending'), 'title' => t('sort descending')) ); } } LeiSHield Kick off Meeting, Paris, 23-25 March 2014 | EU Brazil Cloud Connect

LeiSHield Kick off Meeting, Paris, 23-25 March 2014

// Remove "Log in or register to post comments" text if (isset($content['links']['comment']['#links'])) { foreach ($content['links']['comment']['#links'] as $key => $link) { if ($key == 'comment_forbidden') { unset($content['links']['comment']['#links'][$key]); } } } // Remove the "Add new comment" link on the teaser page or if the comment // form is being displayed on the same page. if ($teaser || !empty($content['comments']['comment_form'])) { unset($content['links']['comment']['#links']['comment-add']); } ?>

A new collaborative action to study leishmaniasis in LeishRIIP partner countries

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LEISHIELD is a new collaborative action to determine prevalence, anticipate emergence and assess urbanization of cutaneous and visceral leishmaniasis in LeishRIIP partner countries.

LeishRIIP provides a novel platform to coordinate efforts in Leishmania research across member institutions of the Reseau International des Instituts Pasteur (RIIP, Institut Pasteur International Network). LeishRIIP aims to promote exchange and discussion between partners, to identify synergisms and complementarities between individual projects, and to increase our competitiveness for national and international funding.

Currently, LeishRIIP covers 9 Institutes with a total of 16 laboratories involved. From 23 to 25 March the LEISHIELD kick off meeting took place in Paris, France. Elisa Cupolillo from Fiocruz and Israel Cruz from ISCIII-WHO-CCL, both partners in EUBRazilCloudConnect, attended the meeting as LEISHIELD external members where they presented the status of Molecular Surveillance of Leishmaniasis in Spain and gave an overview of Leishmania infantum with a focus on the correlation between parasite diversity and the transmission cycle of the disease. Fiocruz and ISCIII-WHO-CC's expertise will help in the coordination of the molecular typing methodology to be used along the project.

LEISHIELD involves researchers working in the field of leishmaniasis from 10 different institutions:

The work related to EUBrazilCloudConnect Use Case 1 and the developmetn of a Leishmaniasis Virtual Lab is very timely for the development of LeiSHield and synergies can between the 2 communities.

More information about the LeishRIIP network are available here http://www.leishriip.org/network.html